There is no general agreement about the molecular mechanism of hydroph
obic hydration. The preferred models all consider only the state of si
ngle water molecules immediately adjacent to the hydrophobic solute to
which they cannot hydrogen bond. Because, fortuitously, all experimen
ts, until recently, have been done at room temperature, the large decr
ease in entropy accompanying hydrophobic hydration has been taken to m
ean that the phenomenon is ''entropy driven'' when common sense says t
hat the effect of losing a whole hydrogen bond is a large increase in
enthalpy. At higher temperatures, enthalpy does become positive, furth
er confusing interpretation. When the cooperativity of water-water hyd
rogen bonding is taken into account, many of the conceptual difficulti
es of the nature of hydrophobic hydration, the magnitude of the hydrop
hobic force and its role in protein folding disappear. (1) It accounts
for the long-range over which the hydrophobic force can sometimes (bu
t not always) act. (2) It suggests that an appreciable population of w
ater molecules close to a hydrophobic surface, out-of-equilibrium with
more distant populations compensate for their excess enthalpy by expa
nding and decreasing their local chemical potential. This explains the
thermodynamic findings for transfer of hydrocarbons from the vapour p
hase to water as a function of temperature. (3) It offers a resolution
of the current uncertainty as to whether the hydrophobic interaction
stabilises or destabilises the folded conformation of proteins. The be
lief that it is destabilising is based on extensive calorimetric measu
rements of transfer of amino acids from the vapour phase to water as a
model for the transfer of amino acids from the central core of a prot
ein to contact with water. It is suggested that this is an inappropria
te model. (4) It is shown that the true hydrophobic interaction which
drives protein folding is not due to oil/water incompatibility as has
always been assumed, but is due to oil/low-density water incompatibili
ty. Low-density water, which has stronger hydrogen bonds and lower int
rinsic entropy than normal water has been shown to form outside double
layers of polyelectrolytes. This low-density water can overlap adjace
nt nonpolar amino acids, inducing a powerful driving force for their s
equestration out of contact with low-density water. (5) It offers mech
anisms for the effects of ions of the Hofmeister series and of compens
atory solutes in the stabilisation and destabilisation of folded prote
ins and ether structures. (6) Other biological structures such as mice
lles, lipid bilayers, polysaccharides and polynucleotides also have bo
th hydrophobic and charged groups to generate the extreme oil/low-dens
ity water incompatibility which promotes structures of singular stabil
ity and order.