ANALYSIS OF TRANSCRIPTION CONTROL REGIONS BY DETECTING INDIVIDUAL TRANSCRIPTION FACTOR-BINDING SITES AND ASSESSING THEIR SPATIAL-ORGANIZATION

Authors
QUANDT K FRECH K WERNER T
Citation
K. Quandt et al., ANALYSIS OF TRANSCRIPTION CONTROL REGIONS BY DETECTING INDIVIDUAL TRANSCRIPTION FACTOR-BINDING SITES AND ASSESSING THEIR SPATIAL-ORGANIZATION, Molecular biology, 31(4), 1997, pp. 638-646
Citations number
33
Categorie Soggetti
Biology
Journal title
Molecular biology → ACNP
ISSN journal
00268933
Volume
31
Issue
4
Year of publication
1997
Pages
638 - 646
Database
ISI
SICI code
0026-8933(1997)31:4<638:AOTCRB>2.0.ZU;2-V
Abstract
We developed a complex of programs for identification and analysis of individual transcription factor-binding sites and more complex regulat ory regions, ConsInd and MatInd are designed for building site consens uses and weight matrices; ConsInspector and MatInspector recognize sit es by these criteria. GenomeInspector reveals correlations between ele ments of gene regulatory regions. The application of this software is exemplified with the yeast genome.