Azathioprine remains one of the most important and widely prescribed d
rugs for immunosuppression/immunomodulation in autoimmune disease over
30 years after its introduction. Extensive clinical experience with a
zathioprine and steady progress in understanding its pharmacodynamic a
nd pharmacokinetic characteristics provide a clear understanding of ho
w this drug has gained importance in the treatment of autoimmune disea
se. This review highlights advances in the understanding of the metabo
lic fate of azathioprine and relates these to the efficacy and toxicit
y profiles for the drug. Clinicians have been slow to appreciate advan
ces in pharmacogenetics that relate to azathioprine and how the common
genetic polymorphism affecting the catabolic enzyme thiopurine methyl
transferase may have profound effects on the toxicity and efficacy of
the drug, as demonstrated by the lack of reference to this work in pub
lications relating to azathioprine. A current literature review has es
tablished that this information has, to a significant degree, now reac
hed the medical disciplines that use azathioprine, but there are still
notable exceptions. The marked interpatient variability in azathiopri
ne metabolism is of particular significance in the context of clinical
trials, which may reach doubtful or invalid conclusions by failing to
consider this in trial protocols. Azathioprine is licensed for the tr
eatment of only a limited range of autoimmune disorders, which is prob
ably a reflection on the age of the drug. Widening the licence for a d
rug is both costly and time consuming, and it would make no commercial
sense for manufacturers to do so, at this late stage of life, for aza
thioprine. However, azathioprine is now so well established as an immu
nomodulating drug in autoimmune disorders that it represents the gold
standard by which other drugs are compared. A review of the literature
shows that usage of azathioprine goes considerably beyond the short l
ist of licensed indications, and in many disciplines usage is continui
ng to increase as new immunotherapies are often too expensive or toxic
to gain widespread acceptance. This review aims to provide on update
on the clinical pharmacology of azathioprine and relate this to the cu
rrent indications for usage in the treatment of autoimmune disorders.