Modifications around the dipeptide-mimetic core of a hydroxamic acid b
ased matrix metalloproteinase inhibitor were studied. These variations
incorporated a variety of natural, unnatural, and synthetic amino aci
ds in addition to modifications of the P1' and P3' substituents. The r
esults of this study indicate the following structural requirements: (
1) Two key hydrogen bonds must be present between the enzyme and poten
t substrates. (2) Potent inhibitors must possess strong zinc-binding f
unctionalities. (3) The potential importance of the hydrophobic group
at position R3 as illustrated by its ability to impart greater relativ
e potency against stromelysin when larger hydrophobic groups are used.
(4) Requirements surrounding the nature of the amino acid appear to b
e more restrictive for stromelysin than for neutrophil collagenase, 72
kDa gelatinase, and 92 kDa gelatinase. These requirements may involve
planar fused-ring aryl systems and possibly hydrogen-bonding capabili
ties.