C. Tuffley et M. Steel, LINKS BETWEEN MAXIMUM-LIKELIHOOD AND MAXIMUM PARSIMONY UNDER A SIMPLE-MODEL OF SITE SUBSTITUTION, Bulletin of mathematical biology, 59(3), 1997, pp. 581-607
Stochastic models of nucleotide substitution are playing an increasing
ly important role in phylogenetic reconstruction through such methods
as maximum likelihood. Here, we examine the behaviour of a simple subs
titution model, and establish some links between the methods of maximu
m parsimony and maximum likelihood under this model. (C) 1997 Society
for Mathematical Biology.