Rchj. Vanham et H. Thart, PHYLOGENETIC-RELATIONSHIPS IN THE CRASSULACEAE INFERRED FROM CHLOROPLAST DNA RESTRICTION-SITE VARIATION, American journal of botany, 85(1), 1998, pp. 123-134
A restriction-site analysis of chloroplast DNA from 44 species, repres
enting 19 genera and all six subfamilies of the Crassulaceae was condu
cted using 12 restriction endonucleases. A total of 969 variable sites
was detected, 608 of which were phylogenetically informative and used
in parsimony analysis. Estimated values of nucleotide sequence diverg
ence were used to construct a distance tree by the neighbor-joining me
thod. Maximum sequence divergence in the family was similar to 7%. Dif
ferent tree inference methods yielded only moderately different topolo
gies. The amount of support for the monophyletic groups obtained in th
e Wagner parsimony analysis was evaluated by bootstrap and decay analy
sis. There is very strong support for a basal division of the family,
which separates the monophyletic subfamily Crassuloideae from all othe
r taxa. Four of the six traditionally recognized subfamilies are indic
ated to be polyphyletic. These include the Cotyledonoideae, Sempervivo
ideae, Sedoideae, and Echeverioideae. The Kalanchoideae and the genera
Cotyledon and Adromischus exhibit low levels of cpDNA sequence diverg
ence relative to one another, suggesting a relatively recent radiation
. The genera Sedum and Rosularia are indicated to be polyphyletic. Sed
um comprises sister taxa of most of the other genera of the family.