The near simultaneous radiation of the major eukaryotic evolutionary a
ssemblages - plants, animals, fungi, and at least three other complex
protist assemblages worthy of 'kingdom level' status - was preceded by
the divergence of many independent protist lineages. The earliest bra
nches are represented by organisms that do not contain mitochondria or
plastids, suggesting that the primitive eukaryotic state did not incl
ude these organelles. New information about nuclear-coded proteins tha
t localize in the mitochondrion, however, suggests that the ancestral
symbionts for mitochondria were present in the first eukaryotes. Phylo
genetic support for this hypothesis is persuasive but it is not possib
le to account for the relative times of divergence for mitochondria an
d their ancestral symbionts relative to eukaryotic branching patterns
inferred from nuclear genes. (C) Current Biology Ltd ISSN 0959-437X.