We examine the effect of the breaking of vorticity conservation by vis
cous dissipation on transport in the underlying fluid flow. The transp
ort of interest is between regimes of different characteristic motion
and is afforded by the splitting of separatrices. A base flow that is
vorticity conserving is therefore assumed to have a separatrix that is
either a homoclinic or heteroclinic orbit. The corresponding vorticit
y dissipating flow, with small time-dependent forcing and viscous para
meter epsilon, maintains an O(epsilon) closeness to the inviscid flow
in a weak sense. An appropriate Melnikov theory that allows for such w
eak perturbations is then developed. A surprisingly simple expression
for the leading-order distance between perturbed invariant (stable and
unstable) manifolds is derived which depends only on the inviscid flo
w. Finally, the implications for transport in barotropic jets are disc
ussed.