The RNA polymerase II (Pol II) holoenzyme in yeast is an essential tra
nscriptional regulatory complex which has been defined by genetic and
biochemical approaches. The mammalian counterpart to this complex, how
ever, is less well defined. Experiments herein demonstrate that, along
with Pol II and SRB proteins, proteins associated with transcriptiona
l regulation as cofactors are associated with the Pol II holoenzyme. E
arlier experiments have demonstrated that the breast cancer-associated
tumor suppressor BRCA1 and the CREB binding protein (CBP) were associ
ated with the holoenzyme complex. The protein related to CBP, the E1A-
associated p300 protein, is shown in these experiments to be associate
d with the holoenzyme complex as well as the BRG1 subunit of the chrom
atin remodeling SWI/SNF complex. Importantly the Pol II holoenzyme com
plex does not contain some factors previously reported as stoichiometr
ic components of the holoenzyme complex, most notably the proteins whi
ch function in repair of damaged DNA, such as PCNA, RFC and RPA. The p
resence of the p300 coactivator and the chromatin-modifying BRG1 prote
in support a role for the Pol II holoenzyme as a key target for regula
tion by enhancer binding proteins.