Crimson clover (Trifolium incarnatum L.) is a cool-season annual forag
e legume. Few morphological traits are recorded to distinguish genotyp
es and very little is known about its genetic diversity. The objective
of this research was to classify and characterize the genetic diversi
ty in the USDA-ARS National Plant Germplasm System (NPGS) accessions a
nd USA and European Economic Community (EEC) cultivars. Descriptions o
f EEC cultivars and their breeding histories are also presented. A sec
ondary objective was to determine if T. incarnatum var. molinerii (Bal
b. ex Hornem.) Ser. should be considered a distinct species. Genomic D
NA from leaves of 37 taxa was examined in 1993 by the polymerase chain
reaction (PCR) using 29 random amplified polymorphic DNA (RAPD) marke
rs. Plants grown in the greenhouse were also observed for inflorescenc
e color and relative flowering time. Cluster analysis of pairwise mean
s of RAPD maker distances and cultivar pedigree histories revealed sim
ilar genetic backgrounds among most cultivars. Flower color was associ
ated with RAPD marker grouping (P less than or equal to 0.02) but flow
ering time was not (P less than or equal to 0.31). Both red vs. non-re
d inflorescence color and early-vs. late-flowering traits could be pre
dicted by specific RAPD bands (95 and 93% accuracy, respectively). Ana
lysis of internal transcribed spacer region sequences (ITS) from ribos
omal DNA (rDNA) showed diverse crimson clover taxon to be more similar
to one another than to var. molinerii (0.4 and 0.9% base pair differe
nces, respectively; P less than or equal to 0.001). Because of the lim
ited diversity within the current NPGS collection, additional accessio
ns should be collected, morphologically evaluated, and genetically ana
lyzed to broaden the genetic base of the collection. Crimson clover va
r. molinerii is a sister taxa of more typical crimson clover accession
s but exhibits enough ITS diversity to be classified as another specie
s.