Previous studies suggest the median allele length of microsatellites i
s longest in the species from which the markers were derived, suggesti
ng that an ascertainment bias was operating. We have examined whether
the size distribution of microsatellite alleles between sheep and catt
le is source dependent using a set of 472 microsatellites that can be
amplified in both species. For those markers that were polymorphic in
both species we report a significantly greater number of markers (P<0.
001) with longer median allele sizes in sheep, regardless of microsate
llite origin. This finding suggests that any ascertainment bias operat
ing during microsatellite selection is only a minor contributor to the
variation observed.