This paper reports results from a preliminary molecular systematic ana
lysis of the chilopod orders. Nucleotide sequences from a slowly evolv
ing nuclear protein-coding gene, elongation factor-1 alpha, were obtai
ned from five centipedes representing the four principal chilopod orde
rs and from five outgroup taxa. Maximum-parsimony analysis of inferred
amino-acid sequences indicated that geophilomorphs form the sister gr
oup to the remaining orders and that lithobiomorphs are the sister gro
up to a clade comprising scolopendromorphs and scutigeromorphs. This c
onclusion conflicts with the widely held view that scutigeromorphs are
the sister group to the other chilopods and that lithobiomorphs form
a sister group to the epimorphic orders. Possible explanations for the
incompatibility of the morphology-based and molecule-based trees are
discussed, and a brief description of ongoing work is presented.