Purpose: This review summarizes the molecular genetics of childhood le
ukemias, with emphasis on pathogenesis and clinical applications. Desi
gn: We first describe the most common genetic events that occur in ped
iatric acute lymphoblastic leukemia (ALL), acute myeloid leukemia (AML
), and chronic myeloid leukemia (CML). We then illustrate how these mo
lecular alterations may be used to alter therapy. Results: In childhoo
d ALL, the TEL-AML1 fusion and hyperdiploidy are both associated with
excellent treatment outcomes and therefore identify patients who may b
e candidates for less intensive therapy. In contrast, MLL gene rearran
gements and the BCR-ABL fusion confer a poor prognosis; these patients
map be best treated by allogeneic bone marrow transplantation in firs
t remission. Conclusions: Although clinical features are important pro
gnostic indicators, genetic alterations of leukemic blasts may be bett
er predictors of outcome for acute leukemia patients. We therefore fav
or risk-adapted therapy based on classification schemes that incorpora
te both genetic and clinical features.