eIF2B is a heteropentameric guanine-nucleotide exchange factor essenti
al for protein synthesis initiation in eukaryotes. Its activity is inh
ibited in response to starvation or stress by phosphorylation of the a
lpha subunit of its substrate, translation initiation factor eIF2, res
ulting in reduced rates of translation and cell growth. We have used a
n in vitro nucleotide-exchange assay to show that wild-type yeast eIF2
B is inhibited by phosphorylated eIF2 [eIF2(alpha P)] and to character
ize eIF2B regulatory mutations that render translation initiation inse
nsitive to eIF2 phosphorylation in vivo. Unlike wild-type eIF2B, eIF2B
complexes with mutated GCN3 or GCD7 subunits efficiently catalyzed GD
P exchange using eIF2(alpha P) as a substrate. Using an affinity-bindi
ng assay, we show that an eIF2B subcomplex of the GCN3, GCD7, and GCD2
subunits binds to eIF2 and has a higher affinity for eIF2(alpha P), b
ut it lacks nucleotide-exchange activity. In contrast, the GCD1 and GC
D6 subunits form an eIF2B subcomplex that binds equally to eIF2 and eI
F2(alpha P). Remarkably, this second subcomplex has higher nucleotide-
exchange activity than wild-type eIF2B that is not inhibited by eIF2(a
lpha P). The identification of regulatory and catalytic eIF2B subcompl
exes leads us to propose that binding of eIF2(alpha P) to the regulato
ry subcomplex prevents a productive interaction with the catalytic sub
complex, thereby inhibiting nucleotide exchange.