Information on genetic variation within and between populations is cri
tical for understanding the evolutionary history of mosquito populatio
ns and disease epidemiology. Previous studies with Drosophila suggest
that genetic variation of selectively neutral loci in a large fraction
of genome may be constrained by fixation of advantageous mutations as
sociated with hitchhiking effect. This study examined restriction frag
ment length polymorphisms of four natural Aedes aegypti mosquito popul
ations from Trinidad and Tobago, at 16 loci. These populations have be
en subjected to organophosphate (OP) insecticide treatments for more t
han two decades, while dichlor-diphenyltrichlor (DDT) was the insectic
ide of choice prior to this period. We predicted that genes closely li
nked to the OP target loci would exhibit reduced genetic variation as
a result of the hitchhiking effect associated with intensive OP insect
icide selection. We also predicted that genetic variability of the gen
es conferring resistance to DDT and loci near the target site would be
similar to other unlinked loci. As predicted, reduced genetic variati
on was found for loci in the general chromosomal region of a putative
OP target site, and these loci generally exhibited larger F-ST values
than other random loci. In contrast, the gene conferring resistance to
DDT and its linked loci show polymorphisms and genetic differentiatio
n similar to other random loci. The reduced genetic variability and ap
parent gene deletion in some regions of chromosome 1 likely reflect th
e hitchhiking effect associated with OP insecticide selection.