Recent studies of nutrient cycling in Sycamore Creek in Arizona, USA,
suggest that a thorough understanding requires a spatially explicit, h
ierarchical approach. Physical configuration determines the path that
water follows as it moves downstream. Water follows flowpaths through
surface stream components, the hyporheic zone beneath the surface stre
am, and the parafluvial (sand bar) zone. Characteristic biogeochemical
processes in these subsystems alter nitrogen (N) species in transport
, in part as a function of available concentrations of N species. At s
everal hierarchical levels, substrate materials are an important deter
minant of nitrogen dynamics in desert streams. Sand is present in bars
of variable size and shape, each of which can be considered a unit, i
nteracting with the surface stream. Groups of these stream-sandbar uni
ts form a higher level, the reach. At the next higher scale, sandy rea
ches (runs) alternate with riffles. Where flowpaths converge, rates of
N transformation are high and, as a result, change in concentration i
s a non-linear function of flowpath length. Disturbance by flash flood
s alters sandbar configuration. Between floods, the interaction of sub
surface and surface flowpaths shapes configuration in each, thus a sel
f-organizing element of spatial structure exists. Sandy runs are domin
ated by subsurface processes and are likely to be net nitrifiers while
riffles are dominated by surface flow and are nitrogen fixers. Whethe
r a stream ecosystem retains nitrogen, or transports it to downstream
recipient systems, or is a net emitter of gaseous forms of N, depends
upon the dynamics of a spatial mosaic of interacting elements. An unde
rstanding of the net effect of this mosaic requires a spatially explic
it, hierarchical, multi-scale approach.