Telomerase is a specialized reverse transcriptase with a built-in RNA
template. Base pairing between the templating domain of telomerase RNA
and a telomeric DNA primer is normally a characteristic of elongation
of telomeric DNA. Here we demonstrate the mechanism by which Tetrahym
ena telomerase bypasses a requirement for template-primer pairing in o
rder to add telomeric DNA de novo to completely non-telomeric DNA prim
ers. We show that this reaction initiates by copying the template resi
due at the 3' boundary of the telomerase RNA template sequence. Unexpe
ctedly, as the RNA template moves through the telomerase catalytic cen
ter, the number of required potential Watson-Crick base pairs between
RNA template and DNA primer increases from zero to five. We propose th
at this unprecedented position specificity of a base pairing potential
requirement in a polymerase underlies the chromosome healing mechanis
m of telomerase, and reflects constraints inherent in an internal temp
late.