Despite widespread applications in biomedical research, the role of mo
dels and modeling is often controversial and ill understood, It is usu
al to find that fundamental definitions, axioms, and postulates used i
n the modeling process have become tacit assumptions, What is essentia
l, however, is a clear vision of the fundamental principles of modelin
g, This is even more compelling for new and emerging interdisciplinary
fields that use techniques from previously separate scientific discip
lines, This article outlines and reviews the central nature and philos
ophy of modeling, the rules that govern it, and its underlying key int
egral relationship to the 'scientific method', A comprehensive underst
anding of these issues is indispensable to successful research and mea
ningful progress in all facets of biomedicine.