Purpose. The main purpose of this study is to analyze the quantitative
structure-activity relationship of two series of dihydroorotate dehyd
rogenase inhibitors (leflunomide and quinoline carboxylic acid analogu
es), and to determine the structural requirements for optimum activity
of these analogues. Methods. A new CQSAR program was used in deriving
regression equations and calculating the octanol/water partition coef
ficient and the molar refractivity values. The molecular modeling was
performed using the HyperChem(R) program. Results. Statistically signi
ficant correlations were obtained using a combination of 3-4 parameter
s. The structural requirements for optimum activity and critical regio
ns for the inhibitory activity of dihydroorotate dehydrogenase were id
entified. Conclusions. The quantitative structure-activity relationshi
p analysis demonstrated that two series of dihydroorotate dehydrogenas
e inhibitors may bind to different binding sites on the enzyme. These
results provide a better understanding of dihydroorotate dehydrogenase
inhibitor-enzyme interactions, and may be useful for further modifica
tion and improvement of inhibitors of this important enzyme.