We examined the spatial distribution of maternally inherited mitochond
rial DNA and paternally inherited chloroplast DNA polymorphisms in a p
ermanently marked stand of ponderosa pine (Pinus ponderosa Laws). Move
ment of maternally inherited mtDNA occurs only via seed dispersal, and
mtDNA haplotypes showed significant patch structure. Moreover, indivi
duals within patches identified by mtDNA haplotypes were related appro
ximately as half-sibs based upon analysis of allozyme genotypes. Thus,
seed dispersal is limited within the population, and creates matrilin
eal clusters in space. By contrast, paternally inherited cpDNA is disp
ersed by movement of both seed and pollen. Chloroplast DNA polymorphis
ms showed no evidence of patch structure, but rather a weak (and nonsi
gnificant) trend toward hyperdispersion, suggesting nearly unlimited m
ovement of pollen among trees within this stand. Two of the trees had
unique allozyme alleles, which were used to directly measure pollen mo
vement away from those trees. Marked pollen was as likely to disperse
across the population as it was to fertilize near neighbors.