The three-dimensional structure of an antibody (39-A11) that catalyzes
a Diels-Alder reaction has been determined, The structure suggests th
at the antibody catalyzes this pericyclic reaction through a combinati
on of packing and hydrogen-bonding interactions that control the relat
ive geometries of the bound substrates and electronic distribution in
the dienophile. A single somatic mutation, serine-91 of the light chai
n to valine, is largely responsible for the increase in affinity and c
atalytic activity of the affinity-matured antibody. Structural and fun
ctional studies of the germ-line precursor suggest that 39-A11 and rel
ated antibodies derive from a family of germ-line genes that have been
selected throughout evolution for the ability of the encoded proteins
to form a polyspecific combining site. Germ line-encoded antibodies o
f this type, which can rapidly evolve into high-affinity receptors for
a broad range of structures, may help to expand the binding potential
associated with the structural diversity of the primary antibody repe
rtoire.