The distribution of constituents from discharges in estuaries can be d
etermined only to the detail with which the time-varying velocity held
is known. Deep estuaries can exhibit complex vertical and horizontal
circulation structures depending on tides, freshwater inflows, density
stratification, and geometry. A numerical, time-varying, three-dimens
ional hydrodynamic and transport model is applied to the Gastineau Cha
nnel, a deep estuary in Alaska, to determine the dilution of material
discharged from a submerged outfall into the Channel. The ability of t
he model to produce realistic flow fields is first confirmed by compar
ing computed velocities to measured velocities for stratified and unst
ratified conditions. Methods are then shown for determining the hushin
g rate of the estuary and the distribution of dilution throughout the
estuary for these same conditions.