X-linked agammaglobulinemia (XLA) is a heritable immunodeficiency caus
ed by mutations in the gene coding for Bruton's tyrosine kinase (Btk).
Btk belongs to the Tec family of tyrosine kinases. Each member of the
family contains five regions and mutations causing XLA have been isol
ated in all five regions. We have determined the solution structure of
the Src homology 3 (SH3) domain of Btk using two-and three-dimensiona
l nuclear magnetic resonance (NMR) spectroscopy on natural abundance a
nd N-15-labeled protein material. The structure determination is compl
emented by investigation of backbone dynamics based on N-15 NMR relaxa
tion. The Btk SH3 forms a well-defined structure and shows the typical
SH3 topology of two shea antiparallel beta-sheets packed almost perpe
ndicular to each other in a sandwich-like fold. The N- and C-termini a
re more flexible as are peptide fragments in the RT and n-Src loops. T
he studied Btk SH3 fragment adopts two slowly interconverting conforma
tions with a relative concentration ratio of 7:1. The overall fold of
the minor form is similar to that of the major form, as judged on the
basis of observed NOE connectivities and small chemical shift differen
ces. A tryptophan (W251) ring flip is the favored mechanism for interc
onversion, although other possibilities cannot be excluded. The side c
hain of Y223, which becomes autophosphorylated upon activation of Btk,
is exposed within the potential SH3 ligand binding site. Finally, we
compare the present Btk SH3 structure with other SH3 structures.