The amount and distribution of mitochondrial (mt) DNA restriction frag
ment length polymorphism was determined among individual tree samples
of two Japanese beech species, Fagus crenata and F.japonica. Individua
l plants were collected from 16 F.crenata populations throughout the r
ange of the species, and from three F.japonica populations. We detecte
d enough variation to characterize eleven and three chondriome types i
n F.crenata and F.japonica, respectively. The grouping of beech chondr
iome types based upon the cladistic analysis of mtDNA polymorphism all
owed us to recognize the apparent geographical patterns of mtDNA diver
sity: the resulting three main groups occupied distinct geographic are
as. This geographic differentiation is likely to reflect the history o
f the Japanese beech forests after the last glacial period of the Plei
stocene. In addition, the mtDNA polymorphism encountered within F.cren
ata encompassed all the variation observed in F.japonica. Our result s
uggests the need for re-evaluation of their phylogenetic relationships
.