The crystal structure of recombinant glycosylasparaginase from Flavoba
cterium meningosepticum has been determined at 2.32 Angstrom resolutio
n. This enzyme is a glycoamidase that cleaves the link between the asp
aragine and the N-acetylglucosamine of N-linked oligosaccharides and p
lays a major role in the degradation of glycoproteins. The three-dimen
sional structure of the bacterial enzyme is very similar to that of th
e human enzyme, although it lacks the four disulfide bridges found in
the human enzyme. The main difference is the absence of a small random
coil domain at the end of the alpha-chain that forms part of the subs
trate binding cleft and that has a role in the stabilization of the te
tramer of the human enzyme. The bacterial glycosylasparaginase is obse
rved as an (alpha beta)(2)-tetramer in the crystal, despite being a di
mer in solution. The study of the structure of the bacterial enzyme al
lows further evaluation of the effects of disease-causing mutations in
the human enzyme and confirms the suitability of the bacterial enzyme
as a model for functional analysis.