Mutations in RNAs of both subunits of the Escherichia coil ribosome ca
used defects in catalysis of peptidyl-tRNA hydrolysis in a realistic i
n vitro termination system. Assaying the two codon-dependent cytoplasm
ic proteins that drive termination, RF1 and RF2, we observed large def
ects with RF2 but not with RF1, a result consistent with the in vivo p
roperties of the mutants. Our study presents the first direct in vitro
evidence demonstrating the involvement of RNAs from both the large an
d the small ribosomal subunits in catalysis of peptidyl-tRNA hydrolysi
s during termination of protein biosynthesis. The results and conclusi
ons are of general significance since the rRNA nucleotides studied hav
e been virtually universally conserved throughout evolution. Our findi
ngs suggest a novel role for rRNAs of both subunits as molecular trans
mitters of a signal for termination.