We have constructed a genetic map for a tilapia, Oreochromis niloticus
using DNA markers. The segregation of 62 microsatellite and 112 anony
mous fragment length polymorphisms (AFLPs) was studied in 41 haploid e
mbryos derived from a single female. We have identified linkages among
162 (93.1%) of these markers. 95% of the microsatellites and 92% of t
he AFLPs were linked in the final map. The map spans 704 Kosambi cM in
30 linkage groups covering the 22 chromosomes of this species. Twenty
-four of these linkage groups contain at least one microsatellite poly
morphism. From the number of markers 15 or fewer cM apart, we estimate
a total map length of similar to 1000-1200 cM. High levels of interfe
rence are observed, consistent with measurements in other fish species
. This map is a starting point for the mapping of single loci and quan
titative traits in cichlid fishes.