The fitness consequences of inbreeding and outbreeding are poorly unde
rstood in natural populations. We explore two microsatellite-based var
iables, individual heterozygosity (likely to correlate with recent inb
reeding) and a new individual-specific internal distance measure, mean
d(2) (focusing on events deeper in the pedigree), in relation to two
measures of fitness expressed early in life, birth weight and neonatal
survival, in 670 red deer calves (Cervus elaphus) born on the Isle of
Rum between 1982 and 1996. For comparison, we also analyse inbreeding
coefficients derived from pedigrees in which paternity was inferred b
y molecular methods. Only 14 out of 231 calves (6.1%) had non-zero inb
leeding coefficients, and neither inbreeding coefficient nor individua
l heterozygosity was consistently related to birth weight or neonatal
survival. However, mean d(2) was consistently related to both fitness
measures. Low mean n(2) was associated with low birth weight, especial
ly following cold Aprils, in which foetal growth is reduced. Low mean
d(2) was also associated with low neonatal survival, but this effect w
as probably mediated by birth weight because fitting birth weight to t
he neonatal survival model displaced mean d(2) as an explanatory varia
ble. We conclude that in the deer population fitness measures expresse
d early in life do not show evidence of inbreeding depression, but the
y do show evidence of heterosis, possibly as a result of population mi
xing. The also demonstrate the practical problems of estimating inbree
ding via pedigrees compared with a direct marker-based estimate of ind
ividual heterozygosity. We suggest that, together, individual heterozy
gosity and mean d(2), estimated using microsatellites, are useful tool
s for exploring inbreeding and outbreeding in natural populations.