Nephropathic cystinosis, an autosomal recessive disorder resulting fro
m defective lysosomal transport of cystine, is the most common inherit
ed cause of renal Fanconi syndrome. The cystinosis gene has been mappe
d to chromosome 17p13. We found that the locus D17S829 was homozygousl
y deleted in 23 out of 70 patients, and identified a novel gene, CTNS,
which mapped to the deletion interval. CTNS encodes an integral membr
ane protein, cystinosin, with features of a lysosomal membrane protein
. Eleven different mutations, all predicted to cause loss of function
of the protein, were found to segregate with the disorder.