Degradation of invariant chain (li) is a critical step in major histoc
ompatibility complex class II-restricted antigen presentation. Catheps
in L was found to be necessary for li degradation in cortical thymic e
pithelial cells (cTECs), but not in bone marrow (BM)derived antigen-pr
esenting cells (APCs). Consequently, positive selection of CD4(+) T ce
lls, was reduced. Because different cysteine proteinases are responsib
le for specific li degradation steps in cTECs and BM-derived APCs, the
proteolytic environment in cells mediating positive and negative sele
ction may be distinct. The identification of a protease involved in cl
ass II presentation in a tissue-specific manner suggests a potential m
eans of manipulating CD4(+) T cell responsiveness in vivo.