The S-locus receptor kinase gene, SRK, and the S-locus glycoprotein ge
ne, SLG, are required for the self-incompatibility response in Brassic
a. A transgenic approach was used to investigate the function of these
genes. Several chimeric genes predicted either to interfere with SRK
function in self-incompatible hosts and possibly generate loss-of-func
tion mutants, or to complement a defective SRK in a self-compatible ho
st and possibly generate gain-of-function plants, were designed. The t
ransgenes led to a dramatic reduction in the expression of endogenous
S-locus and related genes, thus limiting the usefulness of transgenic
approaches for the dissection of S-locus gene function in Brassica. Se
veral features of this 'homology-dependent gene silencing' are describ
ed, including its tissue-specific nature, the lack of a direct correla
tion between the severity of silencing and the extent of sequence simi
larity shared by the silenced gene and the transgene, its association
with increased cytosine methylation of silenced endogenous genes in at
least some cases, and its persistence in transgenic progenies that do
not inherit the transgene. Most significantly, silencing of S genes i
n self-incompatible host plants results in the breakdown of self-incom
patibility in the stigma, whereas a 75% reduction in S gene transcript
s in anthers does not affect pollen phenotype.