Using the yeast two-hybrid system, we have identified a novel 62 kDa c
oiled-coil protein that specifically interacts with the GTP-bound form
of Rab5, a small GTPase that regulates membrane traffic in the early
endocytic pathway. This protein shares 42% sequence identity with Raba
ptin-5, a previously identified effector of Rab5, and we therefore nam
ed it Rabaptin-5 beta. Like Rabaptin-5, Rabaptin-5 beta displays hepta
d repeats characteristic of coiled-coil proteins and is recruited on t
he endosomal membrane by Rab5 in a GTP-dependent manner. However, Raba
ptin-5 beta has features that distinguish it from Rabaptin-5. The rela
tive expression levels of the two proteins varies in different cell ty
pes. Rabaptin-5 beta does not heterodimerize with Rabaptin-5, and form
s a distinct complex with Rabex-5, the GDP/GTP exchange factor for Rab
5. Immunodepletion of the Rabaptin-5 beta complex from cytosol only pa
rtially inhibits early endosome fusion in vitro, whereas the additiona
l depletion of the Rabaptin-5 complex has a stronger inhibitory effect
. Fusion activity can mostly be recovered by addition of the Rabaptin-
5 complex alone, but maximal fusion efficiency requires the presence o
f both Rabaptin-5 and Rabaptin-5 beta complexes. Our results suggest t
hat Rab5 binds to at least two distinct effecters which cooperate for
optimal endocytic membrane docking and fusion.