Ribosomal internal transcribed spacers (ITS1-5.8S-ITS2) sequences were
used to evaluate the phylogenetic relationships within the Aphyllopho
rales. The results indicate that, the Aphyllophorales represent differ
ent independent lineages. In some cases phylogenetics support traditio
nal taxonomic groups, e.g. Hericiales with amyloid spores. In other ca
ses, among ''polypores'', ''corticioids'', or ''hydnaceous'' forms, se
quence data suggest new, unfamiliar groupings chat require revision of
the classification. Phylogenetic analysis of ITS sequence data gives
insights into the branching structure in the tree; we have considered
branchs - as independent evolutionary lineages - which merit formal ta
xonomic status, e.g., order. About twenty orders hai-e been distinguis
hed; five are proposed as new: Peniophorales, Phlebiales, Podoscyphale
s, Trametales, and Vuilleminiales, like that five new families: Acanth
ophysiaceae, Amylostereaceae, Gloiotheleaceae, Lophariaceae and Tramet
aceae. Three new combinations have been also proposed: Scytinostroma i
nsolitum (Boid. ,& Lanq.)n.c., Thanatephorus microsclerotius (Weber)n.
c. and Vararia intexta (Boid. & Lanq.)n.c., The Lachnocladiales appear
as a monophyletic group with a high bootstrap support; this implies t
hat the diagnostic dextrinoid binding hyphae character is valid. In co
ntrast, molecular data do not provide strong support for subgeneric di
scrimination in the Peniophora or sections in the Hymenochaete. The ph
ylogenetic situation is too unstable to formalize now Gloeophyllales a
nd Phaeolales. The work of Hibbett & Donoghue (1995) based on ribosoma
l small subunit senses as the basis for the discussion. With a combina
tion of evidence from ITS sequence data available through GenBank and
from intraspecific groups, we have divided Rhizoctonia solani (anamorp
hic Ceratobasidiales) into four species: Thanatephorus cucumeris (Fran
k)Donk, Thanatephorus praticola (Kotila)Flentje, Thanatephorus sasakii
(Shirai)Tu & Kimbr. and Thanatephorus microsclerotius (Weber)c.v. ITS
regions have rates of substitution that are useful for evaluating the
species level relationships. For example, the ITS data indicated a ne
ar contempory divergence of Central America Amylostereum ferreum and i
ts two closest european relatives. There is little significant diverge
nce within Peniophora quercina and simulans, less than 2 bases per ITS
; considering the conditions used here, the intraspecific diversity mi
ght be a PCR artefact. Here we estimated the substitution rate variati
on among species with different incompatibility systems. Sequences als
o revealed information about the relationships among mycelia lacking b
asidiocarps; examples are given with unidentified aphyllophorean fungi
isolated from bamboos by Zhang et al.