Sequence analysis identified significant variation in the second exon
of equine infectious anemia virus (EIAV) rev. Functional analysis indi
cated that limited amino acid variation in Rev significantly altered t
he export activity of the protein but did not affect Rev-dependent alt
ernative splicing. EIAV Rev can mediate export through two independent
cis-acting Rev-responsive elements (RREs), and differences among Rev
variants were more pronounced when both RREs were present. Variation i
n Rev may be an important mechanism for regulation of virus replicatio
n in vivo and may contribute to changes in clinical disease.