Da. Nugiel et al., IMPROVED P1 P1' SUBSTITUENTS FOR CYCLIC UREA BASED HIV-1 PROTEASE INHIBITORS - SYNTHESIS, STRUCTURE-ACTIVITY RELATIONSHIP, AND X-RAY CRYSTAL-STRUCTURE ANALYSIS/, Journal of medicinal chemistry, 40(10), 1997, pp. 1465-1474
We present several novel P1/P1' substituents that can replace the char
acteristic benzyl P1/P1' moiety of the cyclic urea based HIV protease
inhibitor series. These substituents typically provide 5-10-fold impro
vements in binding affinity compared to the unsubstituted benzyl analo
gs. The best substituent was the 3,4-(ethylenedioxy)benzyl group. Prop
er balancing of the molecule's lipophilicity facilitated the transfer
of this improved binding affinity into a superior cellular antiviral a
ctivity profile. Several analogs were evaluated further for protein bi
nding and resistance liabilities. Compound 18 (IC90 = 8.7 nM) was chos
en for oral bioavailability studies based on its log P and solubility
profile. A 10 mg/kg dose in dogs provided modest bioavailability with
C-max = 0.22 mu g/mL. X-ray crystallographic analysis of two analogs r
evealed several interesting features responsible for the 3,4-(ethylene
dioxy)benzyl-substituted analog's potency: (1) Comparing the two compl
exes revealed two distinct binding modes for each P1/P1' substituent;
(2) The ethylenedioxy moieties are within 3.6 Angstrom of Pro 81 provi
ding additional van der Waals contacts missing from the parent structu
re; (3) The enzyme's Arg 8 side chain moves away from the P1 substitue
nt to accommodate the increased steric volume while maintaining a favo
rable hydrogen bond distance between the para oxygen substituent and t
he guanidine NH.