Clinical trials are the standard for identifying new drugs for the tre
atment of disease, but results are dependent on patient compliance. Th
e success of treatments for HIV disease in particular may be judged in
part by their effect on immunologic, virologic, or clinical measures
collected on patients at regular predefined intervals. If patients dro
p out of a trial before study completion, the analysis of the repeated
ly collected parameters needs to be undertaken and interpreted with ca
re. The authors recommend using graphic techniques to assess the impac
t of the missing data on the profiles of the parameters over time. To
assess treatment differences, a variety of simple tests are proposed t
hat allow different assumptions to be made regarding the reasons for t
he incomplete data. A case study is presented providing an analysis of
CD4 data from the Pediatric Aids Clinical Trials Group (PACTG) Protoc
ol 051, in which only 52% of the patients completed the study while re
maining on treatment; younger patients with lower CD4 counts were more
likely to stop treatment earlier. This type of systematic missing dat
a can lead to incorrect conclusions regarding different treatment effe
cts on CD4 counts. With the data of PACTG 051, however, regardless of
the methodology used, no treatment differences were found. Inconsisten
t conclusions would have indicated the need for more sophisticated sta
tistical techniques to adequately test for treatment differences.