During telomere replication in yeast, chromosome ends acquire an S-pha
se-specific overhang of the guanosine-rich strand. Here it is shown th
at in cells lacking Ku, a heterodimeric protein involved in nonhomolog
ous DNA end joining, these overhangs are present throughout the cell c
ycle. In vivo cross-linking experiments demonstrated that Ku is bound
to telomeric DNA, These results show that Ku plays a direct role in es
tablishing a normal DNA end structure on yeast chromosomes, conceivabl
y by functioning as a terminus-binding factor. Because Ku-mediated DNA
end joining involving telomeres would result in chromosome instabilit
y, our data also suggest that Ku;has a distinct function when bound to
telomeres.