The crystal structure of Bacillus subtilis ribonuclease P protein is r
eported at 2.6 angstroms resolution. This protein binds to ribonucleas
e P RNA to form a ribonucleoprotein holoenzyme with optimal catalytic
activity. Mutagenesis and biochemical data indicate that an unusual le
ft-handed beta alpha beta crossover connection and a large central cle
ft in the protein form conserved RNA binding sites; a metal binding lo
op may comprise a third RNA binding site. The unusual topology is part
ly shared with ribosomal protein S5 and the ribosomal translocase elon
gation factor G, which suggests evolution from a common RNA binding an
cestor in the primordial translational apparatus.