Isolates of Ascochyta pisi, previously identified as separate pathotyp
es, were genotyped by rDNA-RFLP and UP-PCR using 8 UP-primers and 2 ar
bitrary primers individually or in pair-wise combinations. The appeara
nce of polymorphic UP-PCR products for all studied isolates facilitate
d their differentiation. The markers were suitable in identifying isol
ates, and may be useful for developing isolate-or pathotype-specific P
CR-based diagnostic assays. In studying genetic relatedness by UP-PCR
among A, pisi isolates, two distinct clusters were revealed. rDNA anal
ysis of the isolates based on endonuclease digestion of amplified ITS1
and ITS2-25S nuclear rDNA regions did not separate the isolates, wher
eas the variability of the isolates using UP-PCR was more than 40%.