The microbiology of the biomass from a nitrite-oxidizing sequencing ba
tch reactor (NOSBR) fed with an inorganic salts solution and nitrite a
s the sole energy source that had been operating for 6 months was inve
stigated by microscopy, by culture-dependent methods, and by molecular
biological methods, and the seed sludge that was used to inoculate th
e NOSBR was investigated by molecular biological methods, The NOSBR sl
udge comprised a complex and diverse microbial community containing gr
am-negative and gram-positive rods, cocci, and filaments. By culture-d
ependent methods (i.e., micromanipulation and sample dilution and spre
ad plate inoculation), 16 heterotrophs (6 gram positive and 10 gram ne
gative) were identified in the NOSBR sludge (RC), but no autotrophs we
re isolated. 16S ribosomal DNA clone libraries of the two microbial co
mmunities revealed that the seed sludge (GC) comprised a complex micro
bial community dominated by Proteobacteria (29% beta subclass; 18% gam
ma subclass) and high G+C gram-positive bacteria (10%). Three clones (
4%) were closely related to the autotrophic nitrite-oxidizer Nitrospir
a moscoviensis, The NOSBR sludge was overwhelmingly dominated by bacte
ria closely related to N. moscoviensis (89%). Two clone sequences were
similar to those of the genus Nitrobacter, Near-complete insert seque
nces of eight RC and one GC N. moscoviensis clone were determined and
phylogenetically analyzed. This is the first report of the presence of
bacteria from the Nitrospira phylum in wastewater treatment systems,
and it is hypothesized that these bacteria are the unknown nitrite oxi
dizers in these processes.