As part of a workshop sponsored by the Sustainable Biosphere Initiativ
e on Change and Trend Detection, we have reviewed some general conside
rations pertinent to establishing long-term monitoring programs. A gen
eral goal of most long-term monitoring is to assign causality and esta
blish mechanisms for patterns in observed data. However, mechanistic i
nference can be difficult in complex, often uncontrolled, natural syst
ems. We present examples from three lakes representing (1) highly mani
pulated, intensively monitored systems, (2) management situations wher
e many simultaneous manipulations may be occurring, and (3) at-large s
urveillance programs with no deliberate manipulations. We show that at
one end of this continuum, in controlled, intensively monitored lakes
, delayed and counterintuitive responses can make mechanistic inferenc
e difficult. At the other end of the continuum, where no management or
experimental manipulations are underway, it is still possible to asce
rtain mechanism in the presence of apparently conflicting data, given
sufficient information about the system. Management situations are oft
en difficult to decipher; many simultaneous manipulations often confou
nd mechanistic interpretations, although patterns in the data are read
ily apparent.