P. Askjaer et J. Kjems, MAPPING OF MULTIPLE RNA-BINDING SITES OF HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE-I REX PROTEIN WITHIN 5'- AND 3'-REX RESPONSE ELEMENTS, The Journal of biological chemistry, 273(19), 1998, pp. 11463-11471
Interaction between the human T-cell lymphotropic virus type I Rex pro
tein and viral transcripts in the nucleus is essential to the cytoplas
mic appearance of unspliced and singly spliced viral RNA. Rex has been
shown to mediate its function through direct interaction with a highl
y ordered secondary structure in the 3'-untranslated region of all hum
an T-cell lymphotropic virus type I mRNAs termed the Rex response elem
ent (3'-RxRE). Part of the 3'-RxRE sequence is also present in the 5'-
end of viral transcripts (5'-RxRE), and we demonstrate that Rex binds
to this RNA with essentially the same affinity and specificity as to t
he 3'-RxRE. We have analyzed the secondary structures and binding site
s of Rex within the 5'- and 5'-RxREs by enzymatic probing and chemical
modification interference and show that multiple Rex molecules bind w
ithin a stem-loop, which is similarly structured in the two RxREs. Our
experiments confirm the presence of a previously characterized Rex bi
nding site but also identify a common motif within an extended region
that comprises an additional Rex binding site. This suggests that Rex
oligomerizes on the RxREs similarly to what has been observed for bind
ing of the human immunodeficiency virus type 1 Rev protein to the Rev
response element.