D. Collin et K. Gehring, STABILITY OF CHIMERIC DNA RNA CYTOSINE TETRADS - IMPLICATIONS FOR I-MOTIF FORMATION BY RNA/, Journal of the American Chemical Society, 120(17), 1998, pp. 4069-4072
UV melting curves of mono-and di-2'-hydroxylated cytosine tetrads were
recorded. The substitution of one DNA residue by RNA decreased the me
lting temperature (T-m) by roughly 6.5 degrees C. In sequences with tw
o RNA residues, strong positional effects were observed. Juxtaposition
of the two D-ribose sugars in the tetrad incurred an additional loss
of 6 degrees C in tetrad stability and decreased the T-m by 19 degrees
C from that of the parent compound, d(TCCCCC)(4). The effect of incre
asing the number of cytosines on tetrad stability was also measured. A
ddition (or removal) of one cytosine-protonated cytosine base-pair fro
m the tetrad increased (or decreased) the T-m by roughly; 9 degrees C.
Thus, the penalty of adding an RNA residue is equal to or greater tha
n the benefit of the additional base-pair. This implies that the stabi
lity of RNA cytosine-tetrads should not rise with increasing length an
d that thermal transitions previously observed in poly(rC) correspond
to duplex structures.