In this paper we use numerical models of coupled biological-hydrodynam
ic processes to search for general principles of bloom regulation in e
stuarine waters. We address three questions: What are the dynamics of
stratification in coastal systems as influenced by variable freshwater
input and tidal stirring? How does phytoplankton growth respond to th
ese dynamics? Can the classical Sverdrup Critical Depth Model (SCDM) b
e used to predict the timing of bloom events in shallow coastal domain
s such as estuaries? We present results of simulation experiments whic
h assume that vertical transport and net phytoplankton growth rates ar
e horizontally homogeneous. In the present approach the temporally and
spatially varying turbulent diffusivities for various stratification
scenarios are calculated using a hydrodynamic code that includes the M
ellor-Yamada 2.5 turbulence closure model. These diffusivities are the
n used in a time-and depth-dependent advection-diffusion equation, inc
orporating sources and sinks, for the phytoplankton biomass. Our model
ing results show that, whereas persistent stratification greatly incre
ases the probability of a bloom, semidiurnal periodic stratification d
oes not increase the Likelihood of a phytoplankton bloom over that of
a constantly unstratified water column. Thus, for phytoplankton blooms
, the physical regime of periodic stratification is closer to complete
mixing than to persistent stratification. Furthermore, the details of
persistent stratification are important: surface layer depth, thickne
ss of the pycnocline, vertical density difference, and tidal current s
peed all weigh heavily in producing conditions which promote the onset
of phytoplankton blooms. Our model results for shallow tidal systems
do not conform to the classical concepts of stratification and blooms
in deep pelagic systems. First, earlier studies (Riley, 1942, for exam
ple) suggest a monotonic increase in surface layer production as the s
urface layer shallows. Our model results suggest, however, a nonmonoto
nic relationship between phytoplankton population growth and surface l
ayer depth, which results from a balance between several ''competing''
processes, including the interaction of sinking with turbulent mixing
and average net growth occurring within the surface layer. Second, we
show that the traditional SCDM must be refined for application to ene
rgetic shallow systems or for systems in which surface layer mixing is
not strong enough to counteract the sinking loss of phytoplankton. Th
is need for refinement arises because of the leakage of phytoplankton
from the surface layer by turbulent diffusion and sinking, processes n
ot considered in the classical SCDM. Our model shows that, even for lo
w sinking rates and small turbulent diffusivities: a significant perce
ntage of the phytoplankton biomass produced in the surface layer can b
e lost by these processes.