Am. Calcagno et al., GEOGRAPHIC DISCRIMINATION OF PARACOCCIDIOIDES-BRASILIENSIS STRAINS BYRANDOMLY AMPLIFIED POLYMORPHIC DNA ANALYSIS, Journal of clinical microbiology, 36(6), 1998, pp. 1733-1736
Randomly amplified polymorphic DNA (RAPD) analysis of 33 Paracoccidioi
des brasiliensis strains from Argentina, Brazil, Colombia, Peru, and V
enezuela produced reproducible amplification products which were suffi
ciently polymorphic to allow differentiation of the strains. Types gen
erated with five primers (OPG 03, OPG 05, OPG 14, OPG 16, and OPG 18)
resulted in a high discriminatory index (0.956), The discriminatory in
dex was slightly reduced (0.940) when only two primers (OPG 3 and OPG
14) were used. A dendrogram based on these results showed a high degre
e of similarity among the strains, and genetic differences were expres
sed in clusters related to geographical regions but not to pathologica
l features of the disease, With a few exceptions, strains were sorted
into five groups by geographical origin as follows: group I, Venezuela
n strains; group II, Brazilian strains; group III, Peruvian strains; g
roup TV, Colombian strains; and group V, Argentinian strains. The grou
p containing the most disparate strains was group V (discriminatory in
dex, 0.633); the discriminatory index for the other four groups was 0.
824, The use of primer OPG 18 by itself was sufficient to discriminate
species specificity, and the use of primer OPG 14 by itself was suffi
cient to discriminate among the geographical locations of the strains
in the sample. This method may be helpful for epidemiological studies
of P. brasiliensis.