Evolutionary divergence among eukaryotes always involves genetic chang
es at different levels of the genome. At the chromosomal level, hetero
chromatin differentiation resulting in karyotypic evolution provides a
useful tool for cytotaxonomy of many groups of animals including the
dipteran insects. In our studies, detectable differences in the amount
and distribution of heterochromatin have been observed in several gro
ups of closely related species and some sibling species complexes of D
rosophila, Anopheles, and Bactrocera, for example, the D. kikkawai com
plex and the montium subgroup, the An. dirus complex and the maculatus
group, and the B. dorsalis complex and the Zeugodacus group, respecti
vely. Most cases, ii not all, of our studies point to the fact that in
ter-and intraspecific differences in mitotic chromosomes are due to th
e acquisition of major block(s) of constitutive heterochromatin in the
sex chromosome(s) and/or autosome(s), particularly at the pericentric
region. Further, quantitative differences in heterochromatin of mitot
ic chromosomes can be successfully employed as genetic markers for sep
aration of cryptic or isomorphic species in these groups of insects. A
lthough the functional role and implications of heterochromatin in spe
cies differentiation is an unsolved problem, heterochromatin accumulat
ion in the genome is clearly involved in genetic differentiation and k
aryotypic evolution of dipteran insects as demonstrated in the present
study.