Type III restriction endonucleases recognize nonsymmetric nucleotide s
equences. A necessary condition for DNA cleavage is the presence of tw
o unmethylated recognition sites which are inversely ('head-to-head')
oriented in the DNA double strand. A DNA substrate possessing one EcoP
1 and one EcoP15 site in the head-to-head configuration could not be c
leaved by the individual enzymes, however, it was specifically digeste
d in the simultaneous presence of both enzymes. In agreement with the
tracking-collision model for the DNA interaction of type III enzymes c
leavage could be abolished by Lac repressor bound between the two site
s. We conclude that two different type III enzymes can functionally co
operate in the cleavage of DNA.