Ma. Ayliffe et al., ANALYSIS OF PLASTID DNA-LIKE SEQUENCES WITHIN THE NUCLEAR GENOMES OF HIGHER-PLANTS, Molecular biology and evolution, 15(6), 1998, pp. 738-745
A wide-ranging examination of plastid (pt)DNA sequence homologies with
in higher plant nuclear genomes (promiscuous DNA) was undertaken. Dige
stion with methylation-sensitive restriction enzymes and Southern anal
ysis was used to distinguish plastid and nuclear DNA in order to asses
s the extent of variability of promiscuous sequences within and betwee
n plant species. Some species, such as Gossypium hirsutum (cotton), Ni
cotiana tabacum (tobacco), and Chenopodium quinoa showed homogenity of
these sequences, while intraspecific sequence variation was observed
among different cultivars of Pisum sativum (pea), Hordeum vulgare (bar
ley), and Triticum aestivum (wheat). Hypervariability of plastid seque
nce homologies was identified in the nuclear genomes of Spinacea olera
cea (spinach) and Beta vulgaris (beet), in which individual plants wer
e shown to possess a unique spectrum of nuclear sequences with ptDNA h
omology. This hypervariability apparently extended to somatic variatio
n in B. vulgaris. No sequences with ptDNA homology were identified by
this method in the nuclear genome of Arabidopsis thaliana.