Genomic rearrangement of the antigen receptor loci is initiated by the
two lymphoid-specific proteins Rag-1 and Rag-2. Null mutations in eit
her of the two proteins abrogate initiation of V(D)J recombination and
cause severe combined immunodeficiency with complete absence of matur
e B and T rymphocytes. We report here that patients with Omenn syndrom
e, a severe immunodeficiency characterized by the presence of activate
d, anergic, oligoclonal T cells, hypereosinophilia, and high IgE level
s, bear missense mutations in either the Rag-1 or Rag-2 genes that res
ult in partial activity of the two proteins. Two of the amino acid sub
stitutions map within the Rag-1 homeodomain and decrease DNA binding a
ctivity, while three others lower the efficiency of Rag-1/Rag-2 intera
ction. These findings provide evidence to indicate that the immunodefi
ciency manifested in patients with Omenn syndrome arises from mutation
s that decrease the efficiency of V(D)J recombination.