Careful clinical delineation and advances in analytical methods have o
pened new possibilities for the detection of inherited neurometabolic
disorders, some of which require specific CSF analyses for diagnosis.
Although patients suffering from these disorders have recognizable phe
notypes, there are strong indications that remain many undiagnosed, le
ading to a continuation of futile diagnostic searches and, for most di
sorders, withholding of available rational therapy. As there is still
widespread uncertainty about when to perform specialist CSF investigat
ions, it is the aim of this paper to define the place for CSF investig
ations in the diagnostic work-up of a child with an encephalopathy of
unknown origin. Most neurometabolic disorders can be identified throug
h serum, plasma and urine analyses in conjunction with neuroradiologic
al investigations. Whenever CSF investigations are performed, the anal
ysis should include quantitative determination of lactate, pyruvate an
d amino acids, the latter by methods especially suited for CSF, in add
ition to cells, glucose, protein, immunoglobulin classes, specific imm
unoglobulins, and an evaluation of the blood-brain barrier. If the dis
ease course is non-progressive or if extracerebral symptoms are presen
t in addition to an encephalopathy, e.g. endocrinological, hepatic, mu
scular or renal symptoms, investigations of metabolites in CSF over an
d above lactate, pyruvate and amino acids are generally noncontributar
y. Specific CSF investigations, which are discussed in detail, test me
tabolic pathways of brain metabolism, especially of neurotransmission.
For a successful diagnosis of these defects, analyses must be planned
individually, before CSF samples are taken, based on family history,
clinical findings and disease course. Different determinations require
different logistics from taking of the sample to shipment. One indica
tion for specialized CSF analyses including biogenic monoamines and GA
BA is severe neonatal/infantile epileptic encephalopathy. In addition
to a therapeutic trial of Bs, folinic acid should be tried empirically
for two to three days as the emerging syndrome of folinic acid respon
sive seizures appears to be the underlying cause in a sizable proporti
on of patients. In later infancy and childhood, defects in the metabol
ism of the biogenic monoamines may be suspected in patients with (fluc
tuating) extrapyramidal disorders, in particular Parkinsonism dystonia
or more general ''athetoid cerebral palsy'', and vegetative disturban
ces. A severe epileptic encephalopathy and progressive mental retardat
ion may be present. Neuroimaging findings do not show specific lesions
. Determinations of folates and organic acids in CSF appear at present
only warrantable individually in special constellations, e.g. classic
al clinical findings and disease course suggestive of glutaryl-CoA deh
ydrogenase deficiency with repeated negative quantitative analyses of
organic acids in urine. The diagnosis of disorders, which require spec
ific analyses of CSF, can only be achieved by conscious diagnostic dec
isions based on a concept of the respective disease and repeated scrup
olous expert clinical evaluation aided by an array of investigations i
n blood and urine as well as neuroimaging findings. No single one inve
stigation in CSF can serve as a ''selective screening'' test. A growin
g awareness of these disorders is needed and should lead to increased
and earlier diagnosis of patients through fewer rather than more lumba
r punctures.